Rice Blast Physical Mapping

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Rice Blast

New Dec 23 2002 -- Genes from Whitehead were added as markers to the map using BESs and the FPC BSS. A BLAST expectation value of 1e-200 and a % identity cutoff of 99% was used. A total of 1351 markers were added. These all have the MG prefix

A physical map of Magnapotha grisea was created with funds provided by Novartis.

Contig Sizes
Clone Cov Marker Anchor Contig Single >200 200:101 100:51 50:26 25:10 9:3 =2 >5Q
7849 - 188 128 188 512 1 14 44 40 39 33 17 -

  • Select WebChrom for the chromosome view.
  • Select large WebFPC or small WebFPC to view the Rice Blast FPC contigs for your screen size.
    *New release WebFPC V2.1: If the contig will does not load, install Java 1.4.0_03. We have tested this on Internet Explorer 5.0, Netscape 6.2 and Netscape 7. It does not work on Netscape 4.7. See the documentation.

  • Letter of Intent
  • International Rice Blast Genome Consortium Provides the schematics of the chromosomes with links to an aceDB style view of the contigs.
  • Fungal Genomics Laboratory, NCSU
  • Alternative view of FPC and Bac Ends
  • Blast against Magnaportha sequences

    Rice links

  • Rice FPC page
  • ACWW Sequence Status

    • Email comments to webmaster@genome.arizona.edu