Tomato fingerprints
We are collaborating with Dr. Steve Tanksley, Dr. Jim Giovannoni, and Dr.
Greg Martin to build a sequence ready map of tomato. This is funded by NSF
#0116076, "Exploitation of Tomato as a Model for Comparative and Functional
Genomics". More information is provided by the Solanaceae
Genomics Network database.
| |
Contig Sizes |
| Clone |
Cov |
Marker |
Anchor |
Contig |
Single |
>200 |
200:101 |
100:51 |
50:26 |
25:10 |
9:3 |
=2 |
>5Q |
| 88680 |
10x |
644 |
263 |
4385 |
22945 |
0 |
1 |
185 |
616 |
1339 |
1623 |
614 |
1 |
Latest release is August 18 2005.
| WebFPC
| Java display of the Tomato FPC contigs
|
| WebChrom
| view tomato chromosomes
|
| WebBSS
| compare your sequence to the BES and sequenced clones
|
| WebFcmp
| compare fingerprints
|
| FTP
| a tar file the FPC files. Download FPC
V7.2.
|
Tomato BESs
Download
BESs from our FTP site
Tomato BES Sequencing
Summary
| Library |
LE__Ba |
| Total Sequences |
2602 |
| Avg Base Count |
N/A |
| Avg HQ Bases |
N/A |
|
Email comments to webmaster@genome.arizona.edu