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News : Rice Genomics: ‘Editor’s Pick’ on the Springer Nature Grand Challenges
webmaster Posted on 2018/6/21 2:55:32 ( 11 reads )

Rice Genomics
Harnessing the genetic variation in wild and cultivated rice populations will be key to developing Green Super Rice varieties with high yield and low environmental costs.

Rice is a staple crop for half the world’s population, which is expected to grow by three billion over the next 30 years. It is also a key model for studying the genomics of agroecosystems. This dual role places rice at the centre of an enormous challenge facing agriculture: how to leverage genomics to produce enough food to feed an expanding global population. Scientists worldwide are investigating the genetic variation among domesticated rice species and their wild relatives with the aim of identifying loci that can be exploited to breed a new generation of sustainable crops known as Green Super Rice. In their Nature Reviews Genetics article, “The Rice Genome Revolution: from an Ancient Grain to Green Super Rice” authors Rod A. Wing, Michael D. Purugganan and Qifa Zhang review how comparative and functional genomic studies of domesticated and wild rice germplasm collections can be used to inform breeding programmes, with an emphasis on how they are contributing to the development of Green Super Rice varieties.

By Nature Reviews Genetics

https://grandchallenges.springernature ... posts/34168-rice-genomics

News : As Asians get rich and healthy, 'smart crops' replace rice on future menus
webmaster Posted on 2018/5/24 1:18:18 ( 83 reads )

By Rina Chandran

TAIPEI, May 21 (Thomson Reuters Foundation) - Lunchtime in Taipei's Ximending district is a test of wills and patience as tourists and locals jostle at restaurants and street stalls to choose from steamed and fried dumplings, flat and thin noodles, stuffed pancakes, grills and desserts.

In this foodie haven, one item makes only an occasional appearance on menus and on plates - rice.

Once a staple of Taiwanese diets, rice consumption per person has fallen more than two-thirds in 50 years, according to the United Nations' Food and Agricultural Organization (FAO), as "smart crops" and "super foods" muscle their way onto plates.

It is the steepest drop in Asia but a trend across the continent as urbanisation, rising incomes, climate change and concerns about health and food supplies drive a push for alternatives for the future such as millets and more protein.

"I ate a lot of rice when I was younger but now I eat more vegetables, fish and meat. It's healthier," said Guan-Po Lin, 24, who moved to Taipei for university.

"People are spending more on food, and they want to eat healthy, and rice is not seen as a healthy choice."

About 90 percent of global rice production and consumption is in Asia, home to 60 percent of the world's population.

Yet, as trends in Taiwan, Japan, South Korea and Hong Kong show, consumption is set to drop significantly as diets change.

Per capita consumption has fallen about 60 percent in Hong Kong since 1961, and by almost half in Japan. In South Korea, it has slid 41 percent since 1978, FAO data showed.

Alongside that the consumption of fish, meat, dairy, fruits and vegetables has risen significantly.

Rice will still be the single most important crop in the region, key in diets and a symbol of Asian culture, but it will not be as dominant in coming years as new foods are snapped up, said David Dawe, a senior economist at the FAO in Bangkok.

"It is the future for Asia - well-nourished people who can perform better. You cannot get that by filling up on rice; you need more fish, meat, fruits and vegetables," he said.

News : ‘Wild’ genes open up opportunities for healthier, climate-smart rice
webmaster Posted on 2018/1/30 10:40:00 ( 394 reads )

Los Baños, Philippines (30th January 2018) — The genome sequencing of seven wild rice varieties has finally been completed. This breakthrough is expected to provide opportunities for breeders worldwide in developing better rice varieties that will respond to the changing needs of the farmers and the consumers.

This discovery is outlined in the article Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza published by Nature Genetics. The study details the generation of seven wild and two cultivated genomes (IR8 and N22). The IR8, popularly known as “miracle rice,” was developed by rice scientists from the International Rice Research Institute (IRRI). IR8 was one of the rice varieties that ushered in the Green Revolution in Asia during the 1960s and prevented worldwide starvation and famine.

Click to see original Image in a new window ... lthier-climate-smart-rice

News : Dingo Genome Progress Presented at PAG
webmaster Posted on 2018/1/17 14:31:04 ( 433 reads )

SAN DIEGO (GenomeWeb) – A University of New South Wales-led team has sequenced and assembled a desert dingo genome de novo in the hopes of untangling canine domestication in general, along with the dingo's own history in Australia.

UNSW biotechnology and biomedical sciences researcher Bill Ballard presented the work during a PacBio workshop at the Plant and Animal Genome conference here yesterday. He noted that the research follows from pioneering work by the late Alan Wilton, a geneticist at the UNSW, who established a large dingo DNA repository. ... me-progress-presented-pag

News : A Genome Genius
webmaster Posted on 2017/7/19 20:42:16 ( 575 reads )

Endowed chair Rod Wing takes aim at world hunger

News : AGI co-authors a Science Advance article with Monica Schmid’s and Peter Cotty’s labs describing an innovative solution to eliminate aflatoxin contamination from crop plants
webmaster Posted on 2017/3/10 19:50:54 ( 1122 reads ) ... 50-8315-e040ebc78cb9.html

News : Small Molecule Could Play Role in Food Security
webmaster Posted on 2017/3/10 8:00:00 ( 480 reads )

UA researchers have pioneered a new approach that could save millions of tons of crops each year from contamination with aflatoxin, a major threat to health and food security especially in developing parts of the world. ... d-play-role-food-security

News : AGI & IRRI Release a Reference Genome Assembly for Miracle Rice
webmaster Posted on 2016/11/29 1:00:00 ( 1742 reads )

Click to see original Image in a new windowIn honor of the 50th anniversary of Miracle Rice (IR-8) the Arizona Genomics Institute (AGI) ( and the International Rice Research Institute (IRRI) ( is proud to release* a reference genome assembly of IR-8 using PacBio RSII sequencing technology.

This work was funded by the AXA Research Fund to R.A.W. through IRRI.

(*Please note that our GenBank submission (MPPV00000000) is released under the Ft. Lauderdale agreement whereby the AGI/IRRI team reserves the right to publish a detailed analysis of the IR-8 in a forthcoming publication.)

News : Advancing rice varieties to feed burgeoning world
webmaster Posted on 2016/6/4 1:30:00 ( 2249 reads )

Lee Allen, Contributing Writer

It’s almost universally agreed that a perfect storm is developing and agriculture faces a gargantuan task - feeding the world’s population expected to approach the 10 billion mark by 2050.

And if that’s doable, the challenge is how to accomplish this while wrestling with variables including less land, water, farmer numbers, plus the impact of climate change.

The Arizona Genomics Institute (AGI) reports, “With increasing competition for land, water, and other resources, breeders must develop the next generation of crops that have less negative environmental impact and fewer input requirements.”

The Institute, based in Tucson adds, “Crops will be needed that grow with less water, fertilizer, pesticides, on poorer soils, and with less labor - and still produce high-yielding and highly-nutritious foods.”

Click to see original Image in a new window

News : The Rice Transposable Element database is available!
webmaster Posted on 2015/7/2 21:44:55 ( 3242 reads )

The Rice Transposable Element database (RiTE-db) collects repeated sequences and transposable elements (TEs) of several species of the Oryza (rice) genus, and the closely-related Leersia perrieri. In the current version, it contains more than 260,000 characterized sequences, of which 110,000 are full-length elements. Sequences can be browsed and downloaded, and all datasets are usable for remote Blast. All sequences can be used for scientific research upon citation of the source; the database is available at

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A portion of AGI's material is based upon work supported by the National Science Foundation under Grant Number 102620.