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2009 - A Single Molecule Scaffold for the Maize Genome - News

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2009 : A Single Molecule Scaffold for the Maize Genome
  webmaster Posted on 2009/11/20 0:00:00 ( 499 reads )

Shiguo Zhou,1 Fusheng Wei,2 John Nguyen,3 Mike Bechner,1 Konstantinos Potamousis,1 Steve Goldstein,1 Louise Pape,1 Michael R. Mehan,3 Chris Churas,1 Shiran Pasternak,4 Dan K. Forrest,1 Roger Wise,5 Doreen Ware,4,6 Rod A. Wing,2 Michael S. Waterman,3 Miron Livny,7 and David C. Schwartz1*

PLoS Genet. 2009 November; 5(11): e1000711.
Published online 2009 November 20. doi: 10.1371/journal.pgen.1000711

PMCID: PMC2774507

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2009 : Detailed analysis of a contiguous 22-Mb region of the maize genome
  webmaster Posted on 2009/11/20 0:00:00 ( 924 reads )

Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, Nagel DH, Collura K, Kudrna D, Currie J, Lin J, Kim H, Angelova A, Scara G, Wissotski M, Golser W, Courtney L, Kruchowski S, Graves TA, Rock SM, Adams S, Fulton LA, Fronick C, Courtney W, Kramer M, Spiegel L, Nascimento L, Kalyanaraman A, Chaparro C, Deragon JM, Miguel PS, Jiang N, Wessler SR, Green PJ, Yu Y, Schwartz DC, Meyers BC, Bennetzen JL, Martienssen RA, McCombie WR, Aluru S, Clifton SW, Schnable PS, Ware D, Wilson RK, Wing RA.

PLoS Genet. 2009 Nov;5(11):e1000728. Epub 2009 Nov 20.

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2009 : Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs
  webmaster Posted on 2009/11/20 0:00:00 ( 779 reads )

Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y.

PLoS Genet. 2009 Nov;5(11):e1000740. Epub 2009 Nov 20.

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2009 : The physical and genetic framework of the maize B73 genome
  webmaster Posted on 2009/11/20 0:00:00 ( 858 reads )

Wei F, Zhang J, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga BP, Wissotski M, Golser W, Rock SM, Graves TA, Fulton RS, Coe E, Schnable PS, Schwartz DC, Ware D, Clifton SW, Wilson RK, Wing RA.

PLoS Genet. 2009 Nov;5(11):e1000715. Epub 2009 Nov 20.

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2009 : The B73 maize genome: complexity, diversity, and dynamics
  webmaster Posted on 2009/11/20 0:00:00 ( 977 reads )

Click to see original Image in a new windowSchnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK.

Science. 2009 Nov 20;326(5956):1112-5.

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2009 : Species Trees from Highly Incongruent Gene Trees in Rice
  webmaster Posted on 2009/9/21 0:00:00 ( 593 reads )

Cranston KA, Hurwitz B, Ware D, Stein L, Wing RA.

Syst Biol. 2009 Oct;58(5):489-500. Epub 2009 Sep 21.

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2009 : A lineage-specific centromere retrotransposon in Oryza brachyantha
  webmaster Posted on 2009/8/21 0:00:00 ( 652 reads )

Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA.

Plant J. 2009 Dec;60(5):820-31. Epub 2009 Aug 21.

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2009 : Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors
  webmaster Posted on 2009/5/18 0:00:00 ( 528 reads )

Degnan PH, Yu Y, Sisneros N, Wing RA, Moran NA.

Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):9063-8. Epub 2009 May 18.

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2009 : De Novo Next Generation Sequencing of Plant Genomes
  webmaster Posted on 2009/3/7 0:00:00 ( 1102 reads )

Steve Rounsley, Pradeep Reddy Marri, Yeisoo Yu, Ruifeng He, Nick Sisneros, Jose Luis Goicoechea, So Jeong Lee, Angelina Angelova, Dave Kudrna, Meizhong Luo, Jason Affourtit, Brian Desany, James Knight, Faheem Niazi, Michael Egholm, Rod A. Wing

Rice (2009) 2:35–43 published online: 7 March 2009, doi:10.1007/s12284-009-9025-z

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2009 : Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes
  webmaster Posted on 2009/1/22 0:00:00 ( 610 reads )

Lu F, Ammiraju JS, Sanyal A, Zhang S, Song R, Chen J, Li G, Sui Y, Song X, Cheng Z, de Oliveira AC, Bennetzen JL, Jackson SA, Wing RA, Chen M.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):2071-6. Epub 2009 Jan 22.

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A portion of AGI's material is based upon work supported by the National Science Foundation under Grant Number 102620.