The University of Arizona
https://www.genome.arizona.edu
2014 - The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication - News

2014 : The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
  webmaster Posted on 2014/8/12 15:40:00 ( 802 reads )

Muhua Wang, Yeisoo Yu, Georg Haberer, Pradeep Reddy Marri, Chuanzhu Fan, Jose Luis Goicoechea, Andrea Zuccolo, Xiang Song, Dave Kudrna, Jetty S S Ammiraju, Rosa Maria Cossu, Carlos Maldonado, Jinfeng Chen, Seunghee Lee, Nick Sisneros, Kristi de Baynast, Wolfgang Golser, Marina Wissotski, Woojin Kim, Paul Sanchez, Marie-Noelle Ndjiondjop, Kayode Sanni, Manyuan Long, Judith Carney, Olivier Panaud, Thomas Wicker, Carlos A Machado, Mingsheng Chen, Klaus F X Mayer, Steve Rounsley & Rod A Wing

Nature Genetics
(2014)
doi:10.1038/ng.3044

Received
19 January 2014
Accepted
30 June 2014
Published online
27 July 2014

Read More...
2014 : A reference genome for common bean and genome-wide analysis of dual domestications
  webmaster Posted on 2014/6/17 19:37:24 ( 960 reads )

Jeremy Schmutz Phillip E McClean Sujan Mamidi G Albert Wu Steven B Cannon Jane Grimwood Jerry Jenkins Shengqiang Shu Qijian Song Carolina Chavarro Mirayda Torres-Torres Valerie Geffroy Samira Mafi Moghaddam Dongying Gao Brian Abernathy Kerrie Barry Matthew Blair Mark A Brick Mansi Chovatia Paul Gepts David M Goodstein Michael Gonzales Uffe Hellsten David L Hyten Gaofeng Jia James D Kelly Dave Kudrna Rian Lee Manon M S Richard Phillip N Miklas Juan M Osorno Josiane Rodrigues Vincent Thareau Carlos A Urrea Mei Wang Yeisoo Yu Ming Zhang Rod A Wing Perry B Cregan Daniel S Rokhsar Scott A Jackson

Nature Genetics
(2014)
doi:10.1038/ng.3008

Received
08 November 2013
Accepted
15 May 2014
Published online
08 June 2014

Read More...
2014 : Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome
  webmaster Posted on 2014/6/2 22:04:04 ( 690 reads )

Lindsay A. Shearer,* Lorinda K. Anderson,* Hans de Jong,§ Sandra Smit,† José Luis Goicoechea,‡ Bruce A. Roe,** Axin Hua,** James J. Giovannoni, §§ and Stephen M. Stack*

G3: Genes|Genomes|Genetics Early Online, published on May 30, 2014 as doi:10.1534/g3.114.011197

Read More...
2014 : Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies
  webmaster Posted on 2014/5/29 19:52:10 ( 492 reads )

Pan Y1, Deng Y, Lin H, Kudrna DA, Wing RA, Li L, Zhang Q, Luo M.

Plant J. 2014 Mar;77(5):795-805. doi: 10.1111/tpj.12412. Epub 2014 Feb 3.

Read More...
2014 : Disentangling Methodological and Biological Sources of Gene Tree Discordance on Oryza (Poaceae) Chromosome 3
webmaster Posted on 2014/4/21 21:26:36 ( 583 reads )

Derrick J. Zwickl1,5, Joshua C. Stein2, Rod A. Wing3, Doreen Ware2,4 and Michael J. Sanderson1

1Department of Ecology and Evolutionary Biology, University of Arizona, Tucson AZ 85721
2Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724
3School of Plant Sciences, University of Arizona, Tucson, AZ 85721
4Robert W. Holley Center for Agriculture and Health, United States Department of Agriculture-Agricultural Research Service, Ithaca, NY 14853

Read More...
2014 : Genome-wide Prediction of Highly Specific Guide RNA Spacers for the CRISPR-Cas9 Mediated Genome Editing in Model Plants and Major Crops
webmaster Posted on 2014/1/30 9:56:59 ( 1553 reads )

Kabin Xie(a), Jianwei Zhang(b,c) and Yinong Yang(a,d)

a Department of Plant Pathology and Environmental Microbiology, The Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA 16802, USA
b National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China
c Arizona Genomics Institute, University of Arizona, Tucson, AZ 85721, USA
d Institute of Genetics, College of Life Sciences, Zhejiang University, Hangzhou 310058, China

Mol. Plant (2014) doi: 10.1093/mp/ssu009 First published online: January 30, 2014

Read More...
2014 : Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping
  webmaster Posted on 2014/1/22 21:08:47 ( 645 reads )

Xiaoming Wang, David A. Kudrna, Yonglong Pan, Hao Wang, Lin Liu, Haiyan Lin, Jianwei Zhang, Xiang Song, Jose Luis Goicoechea, Rod A. Wing, Qifa Zhang and Meizhong Luo
Early Online January 14, 2014, doi: 10.1534/genetics.113.159970 Genetics January 14, 2014 genetics.113.159970

Read More...
Sponsors:
A portion of AGI's material is based upon work supported by the National Science Foundation under Grant Number 102620.