The University of Arizona
2015 - Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species - News

2015 : Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species
  webmaster Posted on 2015/11/2 10:43:17 ( 1217 reads )

Kyunghee Kim, Sang-Choon Lee, Junki Lee, Yeisoo Yu, Kiwoung Yang, Beom-Soon Choi, Hee-Jong Koh, Nomar Espinosa Waminal, Hong-Il Choi, Nam-Hoon Kim, Woojong Jang, Hyun-Seung Park, Jonghoon Lee, Hyun Oh Lee, Ho Jun Joh, Hyeon Ju Lee, Jee Young Park, Sampath Perumal, Murukarthick Jayakodi, Yun Sun Lee, Backki Kim, Dario Copetti, Soonok Kim, Sunggil Kim, Ki-Byung Lim, Young-Dong Kim, Jungho Lee, Kwang-Su Cho, Beom-Seok Park, Rod A. Wing & Tae-Jin Yang

Scientific Reports 5, Article number: 15655 (2015)
07 July 2015
30 September 2015
Published online:
28 October 2015

2015 : Genome and comparative transcriptomics of African wild rice Oryza longistaminata provide insights into molecular mechanism of rhizomatousness and self-incompatibility
  webmaster Posted on 2015/10/9 17:19:00 ( 769 reads )

Yesheng Zhang1, 3, #, Shilai Zhang2, #, Hui Liu1, 3, #, Binying Fu4, #, Lijuan Li2, #, Min Xie5, Yue Song5, Xin Li1, Jing Cai1, Wenting Wan6, Ling Kui1, 3, Hui Huang7, Jun Lyu1, Yang Dong1, 6, Wensheng Wang4, Liyu Huang2, Jing Zhang2, Qinzhong Yang2, Qinli Shan2, Qiong Li2, Wangqi Huang2, Dayun Tao2, Muhua Wang8, Mingsheng Chen9, Yeisoo Yu8, Rod A. Wing8, Wen Wang1, Fengyi Hu2

Received 19 May 2015, Revised 10 August 2015, Accepted 12 August 2015, Available online 7 September 2015


2015 : Harvesting rice’s dispensable genome
  webmaster Posted on 2015/10/5 10:44:25 ( 453 reads )

Rod A. Wing

Correspondence: Rod A Wing

Author Affiliations
University of Arizona, Arizona Genomics Institute, School of Plant Sciences & Department of Ecology and Evolutionary Biology, Tucson 85750, Arizona, USA

International Rice Research Institute, TT Chang Genetic Resources Center, Los Baños 4031, Laguna, Philippines

Genome Biology 2015, 16:217 doi:10.1186/s13059-015-0787-x

The electronic version of this article is the complete one and can be found online at:

Published: 1 October 2015

2015 : Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome
webmaster Posted on 2015/8/24 17:59:38 ( 723 reads )

María Muñoz-Amatriaín1,†, Stefano Lonardi2,†, MingCheng Luo3, Kavitha Madishetty1, Jan T Svensson1,4, Matthew J Moscou1,5, Steve Wanamaker1, Tao Jiang2, Andris Kleinhofs6, Gary J Muehlbauer7, Roger P Wise8, Nils Stein9, Yaqin Ma1,3, Edmundo Rodriguez1,29, Dave Kudrna10, Prasanna R Bhat1,11, Shiaoman Chao12, Pascal Condamine1, Shane Heinen7, Josh Resnik1, Rod Wing10, Heather N Witt3, Matthew Alpert2, Marco Beccuti2,13, Serdar Bozdag2,14, Francesca Cordero2,13, Hamid Mirebrahim2, Rachid Ounit2, Yonghui Wu2, Frank You15, Jie Zheng2,16, Hana Šimková17, Jaroslav Doležel17, Jane Grimwood18, Jeremy Schmutz18, Denisa Duma2, Lothar Altschmied9, Tom Blake19, Phil Bregitzer20, Laurel Cooper21, Muharrem Dilbirligi6,22, Anders Falk23, Leila Feiz19,24, Andreas Graner9, Perry Gustafson25, Patrick M Hayes21, Peggy Lemaux26, Jafar Mammadov27,28 andTimothy J Close1,*

Author Information
1Department of Botany and Plant Sciences, University of California, Riverside, USA
2Department of Computer Science, University of California, Riverside, USA
3Department of Plant Sciences, University of California, Davis, USA
4Nordic Genetic Resource Center, Alnarp, Sweden
5The Sainsbury Laboratory, Norwich Research Park, Norwich, UK
6Department of Crop and Soil Sciences, Washington State University, Pullman, USA
7Department of Plant Biology, Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, USA
8Corn Insects and Crop Genetics Research, USDA-Agricultural Research Service & Department of Plant Pathology and Microbiology, Iowa State University, Ames, USA
9Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
10Arizona Genomics Institute, University of Arizona, Tucson, USA
11Monsanto Research Center, Bangalore, India
12USDA-ARS Biosciences Research Lab, Fargo, USA
13Department of Computer Science, University of Turin, Turin, Italy
14Deptartment of Mathematics, Statistics and Computer Science, Marquette University, Milwaukee, USA
15Agriculture and Agri-Food Canada, Morden, Manitoba, Canada
16School of Computer Engineering, Nanyang Technological University, Singapore
17Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Olomouc, Czech Republic
18US Department of Energy Joint Genome Institute, Walnut Creek, USA & Hudson Alpha Genome Sequencing Center, Huntsville, USA
19Department of Plant Sciences & Plant Pathology, Montana State University, Bozeman, USA
20USDA-ARS, Aberdeen, USA
21Department of Crop and Soil Science, Oregon State University, Corvallis, USA
22The Scientific and Technological Research Council of Turkey, International Cooperation Department, Ankara, Turkey
23Swedish University of Agricultural Sciences, Uppsala, Sweden
24Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, USA
25USDA, University of Missouri, Columbia, USA
26Department of Plant and Microbial Biology, University of California, Berkeley, USA
27Department of Crop & Soil Environmental Sciences, Virginia Tech, Blacksburg, USA
28Dow AgroSciences LLC, Indianapolis, USA
29Departamento de Ciencias Básicas, Universidad Autonóma Agraria Antonio Narro, México
†Equal contributors.

* Corresponding author: Timothy J. Close, Department of Botany and Plant Sciences, 2150 Batchelor Hall, 900 University Ave., Riverside, CA 92521 (USA). Phone: (951) 827-3318.
Fax: (951) 827-4437. Email:

2015 : RiTE database: a resource database for genus-wide rice genomics and evolutionary biology
  webmaster Posted on 2015/7/30 15:57:42 ( 771 reads )

BMC Genomics 2015, 16:538 doi:10.1186/s12864-015-1762-3

Dario Copetti12, Jianwei Zhang1, Moaine El Baidouri34, Dongying Gao4, Jun Wang5, Elena Barghini6, Rosa M. Cossu7, Angelina Angelova8, Carlos E. Maldonado L.1, Stefan Roffler9, Hajime Ohyanagi10, Thomas Wicker9, Chuanzhu Fan5, Andrea Zuccolo7, Mingsheng Chen11, Antonio Costa de Oliveira12, Bin Han13, Robert Henry14, Yue-ie Hsing15, Nori Kurata10, Wen Wang16, Scott A. Jackson4, Olivier Panaud3 and Rod A. Wing12*

2015 : Transposons play an important role in the evolution and diversification of centromeres among closely related species
  webmaster Posted on 2015/4/7 14:57:00 ( 623 reads )

Dongying Gao1, Ning Jiang2, Rod A. Wing3, Jiming Jiang4 and Scott A. Jackson1*
1Center for Applied Genetic Technologies, University of Georgia, Athens, GA, USA
2Department of Horticulture, Michigan State University, East Lansing, MI, USA
3Department of Plant Sciences, Arizona Genome Institute, University of Arizona, Tucson, AZ, USA
4Department of Horticulture, University of Wisconsin-Madison, Madison, WI, USA

Front. Plant Sci., 07 April 2015 | doi: 10.3389/fpls.2015.00216

A portion of AGI's material is based upon work supported by the National Science Foundation under Grant Number 102620.