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2016 - Sequencing and comparative analysis of Aegilops tauschii chromosome arm 3DS revealed rapid evolution of Triticeae genomes - News

2016 : Sequencing and comparative analysis of Aegilops tauschii chromosome arm 3DS revealed rapid evolution of Triticeae genomes
webmaster Posted on 2016/10/11 11:31:20 ( 1311 reads )

Jingzhong Xie, Naxin Huo, Shenghui Zhou, Yi Wang, Guanghao Guo, Karin R Deal, Shuhong Ouyang, Yong Liang, Zhenzhong Wang, Lichan Xiao, Tingting Zhu, Tiezhu Hu, Vijay Tiwari, Jianwei Zhang, Hongxia Li, Zhongfu Ni, Yingyin Yao, Huiru Peng, Shengli Zhang, Olin D Anderson, Patrick E McGuire, Jan Dvorak, Ming-Cheng Luo, Zhiyong Liu, Yong Q Gu, Qixin Sun

Journal of Genetics and Genomics
Received 19 August 2016, Revised 26 September 2016, Accepted 27 September 2016, Available online 5 October 2016

2016 : The dark side of the genome: revealing the native transposable element/repeat content of eukaryotic genomes
webmaster Posted on 2016/9/30 15:27:38 ( 1241 reads )

Dario Copetti1, 2, Rod A. Wing1, 2, ,
1 Arizona Genomics Institute, BIO5 Institute and School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
2 International Rice Research Institute, T.T. Chang Genetic Resources Center, Los Baños, Laguna, Philippines
Received 10 June 2016, Revised 12 September 2016, Accepted 22 September 2016, Available online 28 September 2016

2016 : Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data
webmaster Posted on 2016/9/14 9:51:41 ( 1263 reads )

Jianwei Zhang, Ling-Ling Chen, Shuai Sun, Dave Kudrna, Dario Copetti, Weiming Li, Ting Mu, Wen-Biao Jiao, Feng Xing, Seunghee Lee, Jayson Talag, Jia-Ming Song, Bogu Du, Weibo Xie, Meizhong Luo, Carlos Ernesto Maldonado, Jose Luis Goicoechea, Lizhong Xiong, Changyin Wu, Yongzhong Xing, Dao-xiu Zhou, Sibin Yu, Yu Zhao, Gongwei Wang, Yeisoo Yu, Yijie Luo, Beatriz Elena Padilla Hurtado, Ann Danowitz, Rod A. Wing & Qifa Zhang

Scientific Data 3, Article number: 160076 (2016)

Received: 22 April 2016
Accepted: 29 July 2016
Published online: 13 September 2016

2016 : DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses
  webmaster Posted on 2016/9/14 9:47:07 ( 1280 reads )

Thomas Wicker, Yeisoo Yu, Georg Haberer, Klaus F. X. Mayer, Pradeep Reddy Marri, Steve Rounsley, Mingsheng Chen, Andrea Zuccolo, Olivier Panaud, Rod A. Wing & Stefan Ronfler

Nature Communications 7, Article number: 12790 (2016)

2016 : Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63
webmaster Posted on 2016/8/17 13:35:30 ( 1301 reads )

Jianwei Zhanga,b,c,1, Ling-Ling Chena,1, Feng Xinga,1, David A. Kudrnab,c, Wen Yaoa, Dario Copettib,c,d, Ting Mua, Weiming Lia, Jia-Ming Songa, Weibo Xiea, Seunghee Leeb,c, Jayson Talagb,c, Lin Shaoa, Yue Ana, Chun-Liu Zhanga, Yidan Ouyanga, Shuai Suna, Wen-Biao Jiaoa, Fang Lva, Bogu Dua, Meizhong Luoa, Carlos Ernesto Maldonadob,c, Jose Luis Goicoecheab,c, Lizhong Xionga, Changyin Wua, Yongzhong Xinga, Dao-Xiu Zhoua, Sibin Yua, Yu Zhaoa, Gongwei Wanga, Yeisoo Yub,c,2, Yijie Luoa, Zhi-Wei Zhoua, Beatriz Elena Padilla Hurtadob,c, Ann Danowitzb, Rod A. Wingb,c,d,3, and Qifa Zhanga,3

Published online before print August 17, 2016, doi: 10.1073/pnas.1611012113
PNAS August 17, 2016

2016 : Genome Puzzle Master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences
webmaster Posted on 2016/6/19 6:10:00 ( 1283 reads )

Jianwei Zhang1,2,*, Dave Kudrna2, Ting Mu1, Weiming Li1, Dario Copetti2,3, Yeisoo Yu2,†, Jose Luis Goicoechea2, Yang Lei1 and Rod A. Wing2,3,*

Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw370
First published online: June 17, 2016

2016 : DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements
webmaster Posted on 2016/5/6 11:40:21 ( 1236 reads )

Jun Wang, Yeisoo Yu, Feng Tao, Jianwei Zhang, Dario Copetti, Dave Kudrna, Jayson Talag, Seunghee Lee, Rod A. Wing and Chuanzhu Fan

Genome Biology201617:92
DOI: 10.1186/s13059-016-0954-8© Wang et al. 2016
Received: 1 October 2015Accepted: 14 April 2016Published: 6 May 2016

2016 : The impact and origin of copy number variations in the Oryza species
webmaster Posted on 2016/4/2 11:08:46 ( 928 reads )

Zetao Bai, Jinfeng Chen, Yi Liao, Meijiao Wang, Rong Liu, Song Ge, Rod A. Wing and Mingsheng Chen
BMC Genomics201617:261
DOI: 10.1186/s12864-016-2589-2© Bai et al. 2016
Received: 25 July 2015Accepted: 15 March 2016Published: 29 March 2016

2016 : Evolution of plant genome architecture
  webmaster Posted on 2016/3/1 10:54:31 ( 1176 reads )

Jonathan F. Wendel, Scott A. Jackson, Blake C. Meyers and Rod A. Wing
Genome Biology201617:37
DOI: 10.1186/s13059-016-0908-1© Wendel et al. 2016
Published: 1 March 2016

A portion of AGI's material is based upon work supported by the National Science Foundation under Grant Number 102620.