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2016 - Sequencing and comparative analysis of Aegilops tauschii chromosome arm 3DS revealed rapid evolution of Triticeae genomes - News

2016 : Sequencing and comparative analysis of Aegilops tauschii chromosome arm 3DS revealed rapid evolution of Triticeae genomes
webmaster Posted on 2016/10/11 11:31:20 ( 486 reads )

Jingzhong Xie, Naxin Huo, Shenghui Zhou, Yi Wang, Guanghao Guo, Karin R Deal, Shuhong Ouyang, Yong Liang, Zhenzhong Wang, Lichan Xiao, Tingting Zhu, Tiezhu Hu, Vijay Tiwari, Jianwei Zhang, Hongxia Li, Zhongfu Ni, Yingyin Yao, Huiru Peng, Shengli Zhang, Olin D Anderson, Patrick E McGuire, Jan Dvorak, Ming-Cheng Luo, Zhiyong Liu, Yong Q Gu, Qixin Sun

Journal of Genetics and Genomics
Received 19 August 2016, Revised 26 September 2016, Accepted 27 September 2016, Available online 5 October 2016

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2016 : The dark side of the genome: revealing the native transposable element/repeat content of eukaryotic genomes
webmaster Posted on 2016/9/30 15:27:38 ( 474 reads )

Dario Copetti1, 2, Rod A. Wing1, 2, ,
1 Arizona Genomics Institute, BIO5 Institute and School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
2 International Rice Research Institute, T.T. Chang Genetic Resources Center, Los Baños, Laguna, Philippines
Received 10 June 2016, Revised 12 September 2016, Accepted 22 September 2016, Available online 28 September 2016

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2016 : Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data
webmaster Posted on 2016/9/14 9:51:41 ( 465 reads )

Jianwei Zhang, Ling-Ling Chen, Shuai Sun, Dave Kudrna, Dario Copetti, Weiming Li, Ting Mu, Wen-Biao Jiao, Feng Xing, Seunghee Lee, Jayson Talag, Jia-Ming Song, Bogu Du, Weibo Xie, Meizhong Luo, Carlos Ernesto Maldonado, Jose Luis Goicoechea, Lizhong Xiong, Changyin Wu, Yongzhong Xing, Dao-xiu Zhou, Sibin Yu, Yu Zhao, Gongwei Wang, Yeisoo Yu, Yijie Luo, Beatriz Elena Padilla Hurtado, Ann Danowitz, Rod A. Wing & Qifa Zhang

Scientific Data 3, Article number: 160076 (2016)
doi:10.1038/sdata.2016.76

Received: 22 April 2016
Accepted: 29 July 2016
Published online: 13 September 2016

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2016 : DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses
  webmaster Posted on 2016/9/14 9:47:07 ( 459 reads )

Thomas Wicker, Yeisoo Yu, Georg Haberer, Klaus F. X. Mayer, Pradeep Reddy Marri, Steve Rounsley, Mingsheng Chen, Andrea Zuccolo, Olivier Panaud, Rod A. Wing & Stefan Ronfler

Nature Communications 7, Article number: 12790 (2016)
doi:10.1038/ncomms12790

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2016 : Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63
webmaster Posted on 2016/8/17 13:35:30 ( 573 reads )

Jianwei Zhanga,b,c,1, Ling-Ling Chena,1, Feng Xinga,1, David A. Kudrnab,c, Wen Yaoa, Dario Copettib,c,d, Ting Mua, Weiming Lia, Jia-Ming Songa, Weibo Xiea, Seunghee Leeb,c, Jayson Talagb,c, Lin Shaoa, Yue Ana, Chun-Liu Zhanga, Yidan Ouyanga, Shuai Suna, Wen-Biao Jiaoa, Fang Lva, Bogu Dua, Meizhong Luoa, Carlos Ernesto Maldonadob,c, Jose Luis Goicoecheab,c, Lizhong Xionga, Changyin Wua, Yongzhong Xinga, Dao-Xiu Zhoua, Sibin Yua, Yu Zhaoa, Gongwei Wanga, Yeisoo Yub,c,2, Yijie Luoa, Zhi-Wei Zhoua, Beatriz Elena Padilla Hurtadob,c, Ann Danowitzb, Rod A. Wingb,c,d,3, and Qifa Zhanga,3


Published online before print August 17, 2016, doi: 10.1073/pnas.1611012113
PNAS August 17, 2016

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2016 : Genome Puzzle Master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences
webmaster Posted on 2016/6/19 6:10:00 ( 520 reads )

Jianwei Zhang1,2,*, Dave Kudrna2, Ting Mu1, Weiming Li1, Dario Copetti2,3, Yeisoo Yu2,†, Jose Luis Goicoechea2, Yang Lei1 and Rod A. Wing2,3,*

Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw370
First published online: June 17, 2016

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2016 : DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements
webmaster Posted on 2016/5/6 11:40:21 ( 495 reads )

Jun Wang, Yeisoo Yu, Feng Tao, Jianwei Zhang, Dario Copetti, Dave Kudrna, Jayson Talag, Seunghee Lee, Rod A. Wing and Chuanzhu Fan

Genome Biology201617:92
DOI: 10.1186/s13059-016-0954-8© Wang et al. 2016
Received: 1 October 2015Accepted: 14 April 2016Published: 6 May 2016

http://www.genomebiology.com/2016/17/1/92

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2016 : The impact and origin of copy number variations in the Oryza species
webmaster Posted on 2016/4/2 11:08:46 ( 541 reads )

Zetao Bai, Jinfeng Chen, Yi Liao, Meijiao Wang, Rong Liu, Song Ge, Rod A. Wing and Mingsheng Chen
BMC Genomics201617:261
DOI: 10.1186/s12864-016-2589-2© Bai et al. 2016
Received: 25 July 2015Accepted: 15 March 2016Published: 29 March 2016

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2016 : Evolution of plant genome architecture
  webmaster Posted on 2016/3/1 10:54:31 ( 746 reads )

Jonathan F. Wendel, Scott A. Jackson, Blake C. Meyers and Rod A. Wing
Genome Biology201617:37
DOI: 10.1186/s13059-016-0908-1© Wendel et al. 2016
Published: 1 March 2016

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A portion of AGI's material is based upon work supported by the National Science Foundation under Grant Number 102620.