Summary of AGI Sequencing Status

Preliminary Sequence Clones Submitted to GenBank Submitted to GenBank
N/A 109 + 23 Artificial Clones 15,710,044bp
total finished sequence

Chromosome 10 - cv Nipponbare

BAC Clones Genome Genter Map Position (cM) Genetic Marker Current Status Genbank Submission Accession Number Size (kbp)
OSJNBa0046L02 AGI 0 L769 Annotation 09 Jun 01 AC079632 142381
OSJNBa0096E22 AGI 1.1 near L169 Annotation 7 Mar 02 AC099400 133845
OSJNBa0071K19 AGI/WU 1.1 L169 Annotation 11 Jan 01 AC069324 174752
OSJNBa0065H03 AGI 1.1 S10620 Annotation 15 Sep 00 AC037197 141017
OSJNBb0012A20 AGI 1.9 C701 Annotation 30 Jan 01 AC079685 131599
OJ1014H12 AGI 1.9 near S10906 Annotation 22 Apr 02 AC098694 129422
OSJNBa0092N12 AGI 1.9 near S10906 Annotation 11 Apr 01 AC078891 109198
OSJNBa0023I19 AGI 1.9 near S10906 Annotation 12 Nov 01 AC079037 157450
OSJNBa0079B05 AGI 1.9 near S10906 Annotation 14 Nov 01 AC079179 145526
OSJNAa0079B05 AGI 1.9 near S10906 Annotation 29 Mar 02 AC116601 39382
OSJNBa0049K09 AGI 2.2 R2965 Annotation 25 Feb 02 AC074282 146576
OSJNAa0049K09 AGI/CSHL 2.2 near R2965 Annotation 27 Aug 02 AC131967 34181
OSJNBa0056A20 AGI 3 near R2946 Annotation 11 Apr 01 AC079128 151163
OSJNBa0020E23 AGI 3 R2946 Annotation 22 Apr 00 AC025098 151359
OSJNBb0072F04 AGI 3 near R2946 Annotation 3 May 02 AC092553 133121
OSJNAb0072F04 AGI 3 near R2946 Annotation 22 May 02 AC122147 27724
OSJNBb0004A06 AGI 3.9 R2309 Annotation 27 Aug 02 AC099734 153377
OSJNBa0013J21 AGI 3.9 near R2309 Annotation 04 Sep 01 AC079843 155290
OSJNBa0087H07 AGI 3.9 near R2309 Annotation 08 Dec 00 AC074283 156654
OSJNAa0087H07 AGI 3.9 near R2309 Annotation 28 Nov 01 AC099733 12368
OSJNBa0029P06 AGI/WU 3.9 near R2309 Annotation 30 Aug 01 AC090873 151533
OSJNAa0029P06 AGI 3.9 near R2309 Annotation 20 Feb 02 AC112513 2319
OSJNBa0034A02 AGI 3.9 near R2309 Annotation 29 Oct 01 AC079852 185904
OSJNBa0030B02 AGI 6.3 near C404 Annotation 05 Jun 01 AC074105 146836
OSJNBb0016M10 AGI 6.3 C404 Annotation 09 Aug 01 AC091665 118101
OSJNBa0031A07 AGI 6.8 near S2087 Annotation 07 Jun 01 AC084884 134553
OSJNBa0028C16 AGI 6.8 near S2087 Annotation 12 Nov 01 AC098565 166757
OSJNAa0028C16 AGI 6.8 near S2087 Annotation 27 Aug 02 AC131966 31030
OSJNBa0034B05 AGI 6.8 near S2087 Annotation 8 Apr 02 AC097446 175061
OSJNAa0034B05 AGI 6.8 near S2087 Annotation 22 May 02 AC122145 5655
OSJNBa0004E08 AGI/WU 6.8 near S2087 Annotation 24 Jan 02 AC091724 158294
OSJNBa0036D19 AGI 6.8 near S2087 Annotation 23 Aug 01 AC087723 144359
OSJNAa0036D19 AGI 6.8 near S2087 Annotation 29 Mar 02 AC116600 6686
OSJNBa0050E08 AGI 7.6 R1933 Annotation 16 Aug 02 AC098696 180499
OSJNBb0042K08 AGI 9.5 S2348 Annotation 18 Dec 01 AC097447 117839
OSJNAb0015J03 AGI 11.4 near C1757S Annotation 20 Aug 02 AC131375 45933
OSJNBa0051J07 AGI 11.4 near C1757S Annotation 28 Jan 02 AC098566 148301
OSJNBa0095J15 AGI 13.3 R2174 Annotation 01 Feb 02 AC092173 156023
OSJNBb0022I16 AGI/WU 13.3 near R2174 Annotation 23 Jun 01 AC091238 127068
OSJNAb0022I16 AGI 13.3 near R2174 Annotation 22 May 01 AC122146 6133
OSJNBa0029P16 AGI/WU 13.3 near R2174 Annotation 02 Feb 02 AC093568 173644
B1107B01
AGI
15.2
near G1125
Annotation
16 Oct 03
AC146893
160104
B1366F05
AGI
15.2
near G1125
Library



OSJNBb0091B12 AGI 15.2 near G1125 Annotation 30 Apr 02 AC093178 137568
OSJNBa0014J14 AGI 15.7 C8 Annotation 18 Apr 02 AC092172 191397
B1089A05
AGI
15.7
near21221SA
Library



OSJNAa0053D03 AGI 15.7 C489 Annotation 27 Aug 02 AC131968 30496
OSJNAb0008A05 AGI 17.1 near C51175 Annotation 16 Aug 02 AC131374 16384
OJA1325D05 AGI 17.1 near C51175 Annotation 26 Sep 02 AC134517 16214
OSJNBb0052C09 AGI 17.9 near C148 Annotation 28 Jul 01 AC090441 139468
OSJNBb0078C13 AGI 17.9 near C148 Annotation 16 Aug 02 AC091666 140553
OSJNAb0023M11 AGI 19 near G1084 Annotation 20 Feb 02 AC112514 228
OSJNAb0075K12 AGI 19 near G1084 Annotation 22 May 02 AC122148 5936
OSJNBa0022D10 AGI 22.3 near S1873 Annotation 13 Feb 02 AC099402 144460
OJA1208D02 AGI 22.3 near S1873 Annotation 26 Sep 02 AC107314 11922
B1082A06
AGI
23.1
S1856
Annotation
16 Oct 03
AC146310
135774
OSJNBb0091O09 AGI 23.1 near R1629 Annotation 14 Nov 01 AC091732 123427
OSJNAa0011L09 AGI 26.1 near C961 Annotation 22 May 02 AC122144 1055

Chromosome 3 - cv Nipponbare

BAC Clones Genome Genter Map Marker (cM) Genetic Marker Current Status Genbank Submission Accession Number Size (kbp)
OSJNBa0009C08 AGI 1.1 near S1792 Annotation 16 Oct 02 AC107224 137033
OJ1384D03 CSHL/AGI 1.1 near S1792 Annotation 21 Oct 02 AC113930 116214
OSJNBb0043C10 AGI 1.1 near S10760 Annotation 21 Oct 02 AC105733 108688
OSJNBb0005F16 CSHL/AGI 1.9 c515 Annotation 19 Dec 02 AC121490 160053
OSJNBa0090O10 AGI 2.2 C567 Annotation 17 Dec 02 AC134237 134237
OSJNBa0056G13 AGI 2.5 near R1468B Annotation 20 Dec 02 AC134236 149349
OJ1263H11 CSHL/AGI 2.5 near R1468B Annotation 17 Dec 02 AC118980 118980
OJ1705B08 AGI 2.5 near R1468B Annotation 5 Jun 02 AC105363 100986
OJ1126B12 AGI 2.5 near R1468B Annotation 12 Nov 02 AC098695 146241
OJ1015F07 AGI 6.3 near C1153 Annotation 23 Apr 02 AC104427 117612
OJA1015F07
AGI
6.3
near C1153
Annotation
14 Apr 03
AC144426
7098
OJ1528D07 AGI 6.3 near C1153 Annotation 18 Sep 02 AC099739 87592
OJ1004C08 AGI 7.9 near S1554 Annotation 30 Apr 02 AC098693 133090
OJA1004C08 AGI 7.9 near S1554 Annotation 18 Feb 03 AC140005 18831
OJ1006F06 AGI 7.9 near S1554 Annotation 16 Aug 02 AC099399 122218
OSJNBa0003A09 CSHL/AGI 10.9 C1279 Annotation 5 Feb 03 AC118132 166560
OSJNBa0030C11 AGI 10.9 C1279 Annotation
30 Jun 03
AC137930 156647
OSJNBa0083D24 CSHL/AGI 13.3 near C725 Annotation
7 Apr 03
AC122149 150503
OJ1172F09 CSHL/AGI 13.3 near C725 Annotation 17 Dec 02 AC119796 119796
OSJNBb0050N02 AGI 13.3 near C725 Annotation 6 Dec 02 AC105734 133373
OSJNBa0016I15 AGI 13.3 near C725 Annotation
8 Apr 03
AC134233 166282
OSJNBa0011L14 AGI 15.2 near S2514 Annotation 5 Jun 02 AC105730 117974
OJ1134F05 AGI 15.2 near S2514 Annotation 16 Aug 02 AC099401 101799
OSJNBa0083G16 CSHL/AGI 15.2 near S2514 Annotation 28 Feb 03 AC119797 145590
OJ1607A12 AGI 15.2 near S2514 Annotation 16 Aug 02 AC105729 177327
OJ1123F12 AGI 16.8 near R265A Annotation 15 Apr 02 AC104428 103330
OSJNAa0091P11
AGI
16.8
near R265A
Annotation
21 Apr 03
AC144491
12151
OSJNBa0026H19 AGI 16.8 R265A Annotation 19 Dec 02 AC107225 149349
OSJNBa0015N19 CSHL/AGI 17.9 near C25 Annotation 01 Apr 03 AC126221 168430
OSJNBa0050H14 CSHL/AGI 18.4 near R518 Annotation 12 Dec 02 AC125472 142245
OSJNBb0076N15 CSHL/AGI 20.3 near S2769 Annotation 21 Oct 02 AC126223 134307
OSJNBa0042J17 CSHL/AGI/WU 21.8 near S2264 Annotation 10 Mar 03 AC125471 171442
OJ1217B09 CSHL/AGI 21.8 near S2264 Annotation 21 Oct 02 AC121489 148894
OSJNBa0064E16 AGI 25 near R3212 Annotation 21 Oct 02 AC105731 159092
OSJNBb0006P09 AGI 27.9 near R176 Annotation 5 Mar 03 AC104429 153950
OSJNBa0014O06 AGI 27.9 near R176 Annotation 21 Nov 02 AC105928 168031
OSJNBb0085F02 AGI 28.2 C316 Annotation
11 Apr 03
AC134241 128535
OJ1193C08 AGI 28.5 near R2479 Annotation
8 Apr 03
AC135158 111961
OSJNBa0090D11 AGI 28.5 near R2479 Annotation
2 Apr 03
AC105732 174865
OSJNAa0090D11 AGI 28.5 near R2479 Annotation 18 Feb 03 AC140006 5403
OSJNBa0024O21 AGI 28.5 near R2479 Annotation 19 Dec 02 AC104474 155651
OJ1743A09 AGI 28.5 near R2479 Annotation 16 Aug 02 AC105364 146568
OSJNBa0081P02 AGI 31 near C245 Annotation 21 Oct 02 AC107226 162425
OJ1626B05 AGI 31 near C245 Annotation 16 Oct 02 AC104473 127946
OJ1203D03 AGI 31.3 near C563 Annotation 8 May 02 AC099732 82352
OJ1781E12 AGI 33.5 near S10968 Annotation 12 Dec 02 AC105927 120392
OJ1017C11 AGI 34.8 near G55 Annotation 12 Dec 02 AC135157 166072
OJ1175C11 AGI 34.8 near G55 Annotation 23 Apr 02 AC103891 123620
OJ1081D05 AGI 36.1 near R2015 Annotation 12 Dec 02 AC134229 99133
OSJNBb0042A11 AGI 36.1 near R2015 Annotation 18 Feb 03 AC134239 113049
OSJNBa0030J04 AGI 37.7 near C706 Annotation 24 Feb 03 AC134235 153431
OSJNBb0081I10 AGI 39 R2293 Annotation 24 Feb 03 AC134240 143296
OSJNBa0019J12 AGI 39 R2293 Annotation 10 Mar 03 AC134234 195583
OJ1664B11 AGI 39 R2293 Annotation 6 Mar 03 AC135495 126040
OSJNBa0085M22 CSHL/AGI/WU 40.3 R1868 Annotation 25 Mar 03 AC125495 146442
OJ1041F02 AGI 40.3 near R1868 Annotation 10 Jan 03 AC135206 137327
OJ1012B02 AGI 41.9 near R867 Annotation 18 Dec 02 AC135205 115270
OJ1364E02 AGI 41.9 near R867 Annotation 24 Jan 03 AC135208 112265
OJA1364E02 AGI 41.9 near R867 Annotation 24 Jan 03 AC139168 6026
OSJNBa0071M09 AGI 41.9 near R867 Annotation 24 Jan 03 AC135209 143595
OJ1261C08 AGI 41.9 near R867 Annotation 10 Jan 03 AC135207 99910
OSJNBb0016G06 AGI 41.9 near L761 Annotation
7 Apr 03
AC134238 119910
OSJNBa0013D02 AGI 44.1 near C614 Annotation 17 Dec 02 AC134232 131884
OSJNBb0078C05 AGI 46.6 near C1488 Annotation 03 Mar 03 AC137634 122116
OSJNBa0039F10 AGI 46.9 near C2184A Annotation
25 Jun 03
AC137931 139714
OSJNBa0005J15 AGI 49.3 near R1862 Annotation 10 Mar 03 AC134230 159270
OSJNBb0014I10 CSHL/AGI 50.8 near R3156 Annotation 21 Oct 02 AC126222 113946
OSJNBa0052J20 AGI 50.8 near R3156 Annotation 01 Apr 03 AC137547 144969
OSJNBb0098H14 CSHL/AGI 56.3 near C269A Annotation 12 Dec 02 AC125496 133096
OSJNBb0050D18 CSHL/AGI 57.2 R2906S Annotation 10 Mar 03 AC121491 126350
B1339A06
AGI
57.2
R2906S
Template



OSJNBa0006D11
AGI
59.5
near C1135
Annotation
12 Dec 02
AC134231
176637
OSJNBb0078O24 CSHL/AGI 61.9 near C582 Annotation
8 Sep 03
AC126224 135980
OSJNAb0012F18
AGI 64.9
R2170
Annotation 14 Apr 03 AC144427 2159
OSJNBb0004M10 AGI 76.6
Annotation 12 May 01 AC079853 152423

Other Chromosomes - cv Nipponbare

BAC Clones Genome Genter Map Position (cM) Genetic Marker Current Status Genbank Submission Accession Number Size (bp)
OSJNBb0024A20 AGI 7_
Annotation 24 May 01 AC079038 129838
OSJNBb00016A06 AGI 1_
Finishing 2
AC091664
OSJNBa0029E07 AGI 1_
Finishing 2
AC135159