Publications

A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni

Adema CM, Luo MZ, Hanelt B, Hertel LA, Marshall JJ, Zhang SM, DeJong RJ, Kim HR, Kudrna D, Wing RA, Soderlund C, Knight M, Lewis FA, Caldeira RL, Jannotti-Passos LK, Carvalho Odos S, Loker ES

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

Hawkins JS, Kim H, Nason JD, Wing RA, Wendel JF

Uneven chromosome contraction and expansion in the maize genome

Bruggmann R, Bharti AK, Gundlach H, Lai J, Young S, Pontaroli AC, Wei F, Haberer G, Fuks G, Du C, Raymond C, Estep MC, Liu R, Bennetzen JL, Chan AP, Rabinowicz PD, Quackenbush J, Barbazuk WB, Wing RA, Birren B, Nusbaum C, Rounsley S, Mayer KF, Messing J

Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

Barbara L Hass-Jacobus, Montona Futrell-Griggs, Brian Abernathy, Rick Westerman, Jose-Luis Goicoechea, Joshua Stein, Patricia Klein, Bonnie Hurwitz, Bin Zhou, Fariborz Rakhshan, Abhijit Sanyal, Navdeep Gill, Jer-Young Lin, Jason G Walling, Mei Z Luo

Jetty SS Ammiraju, Dave Kudrna, Hye R Kim, Doreen Ware, Rod A Wing, Phillip S Miguel and Scott A Jackson

Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere

Yan H, Ito H, Nobuta K, Ouyang S, Jin W, Tian S, Lu C, Venu RC, Wang GL, Green PJ, Wing RA, Buell CR, Meyers BC, Jiang J

Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey

Meizhong Luo, HyeRan Kim, Dave Kudrna, Nicholas B Sisneros, So-Jeong Lee, Christopher Mueller, Kristi Collura, Andrea Zuccolo, E Bryan Buckingham, Suzanne M Grim, Kazuyo Yanagiya, Hidetoshi Inoko, Takashi Shiina, Martin F Flajnik, Rod A Wing and Yuko Ohta

Two highly representative rice BAC libraries of japonica cv Tainung 67 suitable for rice structural and functional genomic research

Yann-Rong Lin, Teh-Yuan Chow, Meizhong Luo, Dave Kudrna, Chih-Chi Lin, Rod A. Wing, Yue-Ie C. Hsing

A global assembly of cotton ESTs

Udall JA, Swanson JM, Haller K, Rapp RA, Sparks ME, Hatfield J, Yu Y, Wu Y, Dowd C, Arpat AB, Sickler BA, Wilkins TA, Guo JY, Chen XY, Scheffler J, Taliercio E, Turley R, McFadden H, Payton P, Klueva N, Allen R, Zhang D, Haigler C, Wilkerson C, Suo J

Schulze SR, Pierce ML, Essenberg M, Kim H, Llewellyn DJ, Dennis ES, Kudrna D, Wing R, Paterson AH, Soderlund C, Wendel JF

The Oryza BAC library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries

Jetty S.S. Ammiraju, Meizhong Luo, José L. Goicoechea, Wenming Wang, Dave Kudrna, Christopher Mueller, Jayson Talag, HyeRan Kim, Nicholas B. Sisneros, Barbara Blackmon, Eric Fang, Jeffery B. Tomkins, Darshan Brar, David MacKill, Susan McCouch, Nori Kurata

Georgina Lambert, David W. Galbraith, K. Arumuganathan, Kiran Rao, Jason G. Walling, Navdeep Gill, Yeisoo Yu, Phillip SanMiguel, Carol Soderlund, Scott Jackson, and Rod A. Wing

Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region

Luo M, Yu Y, Kim H, Kudrna D, Itoh Y, Agate RJ, Melamed E, Goicoechea JL, Talag J, Mueller C, Wang W, Currie J, Sisneros NB, Wing RA, Arnold AP

Efficient insertional mutagenesis in rice using the maize En/Spm elements

Kumar CS, Wing RA, Sundaresan V

Structure and architecture of the maize genome

Haberer G, Young S, Bharti AK, Gundlach H, Raymond C, Fuks G, Butler E, Wing RA, Rounsley S, Birren B, Nusbaum C, Mayer KF, Messing J

Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome

Ammiraju JS, Yu Y, Luo M, Kudrna D, Kim H, Goicoechea JL, Katayose Y, Matsumoto T, Wu J, Sasaki T, Wing RA

Whole-genome validation of high-information-content fingerprinting

Nelson WM, Bharti AK, Butler E, Wei F, Fuks G, Kim H, Wing RA, Messing J, Soderlund C

The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species

Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S

Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species

The Rice Chromosome 3 Sequencing Consortium

The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

The Rice Chromosomes 11 and 12 Sequencing Consortia

Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts

Pratt LH, Liang C, Shah M, Sun F, Wang H, Reid SP, Gingle AR, Paterson AH, Wing R, Dean R, Klein R, Nguyen HT, Ma HM, Zhao X, Morishige DT, Mullet JE, Cordonnier-Pratt MM

Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses

Bowers JE, Arias MA, Asher R, Avise JA, Ball RT, Brewer GA, Buss RW, Chen AH, Edwards TM, Estill JC, Exum HE, Goff VH, Herrick KL, Steele CL, Karunakaran S, Lafayette GK, Lemke C, Marler BS, Masters SL, McMillan JM, Nelson LK, Newsome GA, Nwakanma CC

Odeh RN, Phelps CA, Rarick EA, Rogers CJ, Ryan SP, Slaughter KA, Soderlund CA, Tang H, Wing RA, Paterson AH

The map-based sequence of the rice genome

International Rice Genome Sequencing Project