Publications

Yang, R., Jarvis, D. E., Chen, H., Beilstein, M. A., Grimwood, J., Jenkins, J., Shu, S., Prochnik, S., Xin, M., Ma, C., Schmutz, J., Wing, R. A., Mitchell-Olds, T., Schumaker, K. S., & Wang, X. (2013). The Reference Genome of the Halophytic Plant Eutrema salsugineum. Frontiers in Plant Science, 4. https://doi.org/10.3389/fpls.2013.00046

Yang, L., Liu, T., Li, B., Sui, Y., Chen, J., Shi, J., Wing, R. A., & Chen, M. (2012). Comparative Sequence Analysis of the Ghd7 Orthologous Regions Revealed Movement of Ghd7 in the Grass Genomes. PLoS ONE, 7(11), e50236. https://doi.org/10.1371/journal.pone.0050236

A physical, genetic and functional sequence assembly of the barley genome. (2012). Nature, 491(7426), 711–716. https://doi.org/10.1038/nature11543

The tomato genome sequence provides insights into fleshy fruit evolution. (2012). Nature, 485(7400), 635–641. https://doi.org/10.1038/nature11119

Figueira, T. R. e S., Okura, V., Rodrigues da Silva, F., Jose da Silva, M., Kudrna, D., Ammiraju, J. S., Talag, J., Wing, R., & Arruda, P. (2012). A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome. BMC Research Notes, 5(1). https://doi.org/10.1186/1756-0500-5-185

Neilson, J. W., Quade, J., Ortiz, M., Nelson, W. M., Legatzki, A., Tian, F., LaComb, M., Betancourt, J. L., Wing, R. A., Soderlund, C. A., & Maier, R. M. (2012). Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile. Extremophiles, 16(3), 553–566. https://doi.org/10.1007/s00792-012-0454-z

Ha, J., Abernathy, B., Nelson, W., Grant, D., Wu, X., Nguyen, H. T., Stacey, G., Yu, Y., Wing, R. A., Shoemaker, R. C., & Jackson, S. A. (2012). Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.). G3 Genes|Genomes|Genetics, 2(3), 321–329. https://doi.org/10.1534/g3.111.001834

Lin, H., Xia, P., Wing, R. A., Zhang, Q., & Luo, M. (2012). Dynamic Intra-Japonica Subspecies Variation and Resource Application. Molecular Plant, 5(1), 218–230. https://doi.org/10.1093/mp/ssr085

Li, H.-J., Li, X.-H., Xiao, J.-H., Wing, R. A., & Wang, S.-P. (2012). Ortholog Alleles at Xa3/Xa26 Locus Confer Conserved Race-Specific Resistance against Xanthomonas oryzae in Rice. Molecular Plant, 5(1), 281–290. https://doi.org/10.1093/mp/ssr079

Fan, C., Walling, J. G., Zhang, J., Hirsch, C. D., Jiang, J., & Wing, R. A. (2011). Conservation and Purifying Selection of Transcribed Genes Located in a Rice Centromere. The Plant Cell, 23(8), 2821–2830. https://doi.org/10.1105/tpc.111.085605

Jacquemin, J., Chaparro, C., Laudie, M., Berger, A., Gavory, F., Goicoechea, J. L., Wing, R. A., & Cooke, R. (2011). Long-Range and Targeted Ectopic Recombination between the Two Homeologous Chromosomes 11 and 12 in Oryza Species. Molecular Biology and Evolution, 28(11), 3139–3150. https://doi.org/10.1093/molbev/msr144

Song, X., Goicoechea, J. L., Ammiraju, J. S. S., Luo, M., He, R., Lin, J., Lee, S.-J., Sisneros, N., Watts, T., Kudrna, D. A., Golser, W., Ashley, E., Collura, K., Braidotti, M., Yu, Y., Matzkin, L. M., McAllister, B. F., Markow, T. A., & Wing, R. A. (2011). The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research. Genetics, 187(4), 1023–1030. https://doi.org/10.1534/genetics.111.126540

Paiva, J. A., Prat, E., Vautrin, S., Santos, M. D., San-Clemente, H., Brommonschenkel, S., Fonseca, P. G., Grattapaglia, D., Song, X., Ammiraju, J. S., Kudrna, D., Wing, R. A., Freitas, A. T., Bergès, H., & Grima-Pettenati, J. (2011). Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. BMC Genomics, 12(1). https://doi.org/10.1186/1471-2164-12-137

Cooper, K. K., Cooper, M. A., Zuccolo, A., Law, B., & Joens, L. A. (2011). Complete Genome Sequence of Campylobacter jejuni Strain S3. Journal of Bacteriology, 193(6), 1491–1492. https://doi.org/10.1128/jb.01475-10

Tian, Z., Yu, Y., Lin, F., Yu, Y., SanMiguel, P. J., Wing, R. A., McCouch, S. R., Ma, J., & Jackson, S. A. (2011). Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. BMC Genomics, 12(1). https://doi.org/10.1186/1471-2164-12-142

Op den Camp, R., Streng, A., De Mita, S., Cao, Q., Polone, E., Liu, W., Ammiraju, J. S. S., Kudrna, D., Wing, R., Untergasser, A., Bisseling, T., & Geurts, R. (2011). LysM-Type Mycorrhizal Receptor Recruited for Rhizobium Symbiosis in Nonlegume Parasponia. Science, 331(6019), 909–912. https://doi.org/10.1126/science.1198181

Zuccolo, A., Bowers, J. E., Estill, J. C., Xiong, Z., Luo, M., Sebastian, A., Goicoechea, J., Collura, K., Yu, Y., Jiao, Y., Duarte, J., Tang, H., Ayyampalayam, S., Rounsley, S., Kudrna, D., Paterson, A. H., Pires, J., Chanderbali, A., Soltis, D. E., … Leebens-Mack, J. (2011). A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biology, 12(5), R48. https://doi.org/10.1186/gb-2011-12-5-r48

Lin, J., Kudrna, D., & Wing, R. A. (2011). Construction, Characterization, and Preliminary BAC-End Sequence Analysis of a Bacterial Artificial Chromosome Library of the Tea Plant (Camellia sinensis). Journal of Biomedicine and Biotechnology, 2011, 1–8. https://doi.org/10.1155/2011/476723

Blair, M. W., Hurtado, N., Chavarro, C. M., Muñoz-Torres, M. C., Giraldo, M. C., Pedraza, F., Tomkins, J., & Wing, R. (2011). Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series. BMC Plant Biology, 11(1), 50. https://doi.org/10.1186/1471-2229-11-50

Ali, M. L., Sanchez, P. L., Yu, S.- bin, Lorieux, M., & Eizenga, G. C. (2010). Chromosome Segment Substitution Lines: A Powerful Tool for the Introgression of Valuable Genes from Oryza Wild Species into Cultivated Rice (O. sativa). Rice, 3(4), 218–234. https://doi.org/10.1007/s12284-010-9058-3

Argout, X., Salse, J., Aury, J.-M., Guiltinan, M. J., Droc, G., Gouzy, J., Allegre, M., Chaparro, C., Legavre, T., Maximova, S. N., Abrouk, M., Murat, F., Fouet, O., Poulain, J., Ruiz, M., Roguet, Y., Rodier-Goud, M., Barbosa-Neto, J. F., Sabot, F., … Lanaud, C. (2010). The genome of Theobroma cacao. Nature Genetics, 43(2), 101–108. https://doi.org/10.1038/ng.736

Febrer, M., Goicoechea, J. L., Wright, J., McKenzie, N., Song, X., Lin, J., Collura, K., Wissotski, M., Yu, Y., Ammiraju, J. S. S., Wolny, E., Idziak, D., Betekhtin, A., Kudrna, D., Hasterok, R., Wing, R. A., & Bevan, M. W. (2010). An Integrated Physical, Genetic and Cytogenetic Map of Brachypodium distachyon, a Model System for Grass Research. PLoS ONE, 5(10), e13461. https://doi.org/10.1371/journal.pone.0013461

Gill, N., SanMiguel, P., Dhillon, B. D. S., Abernathy, B., Kim, H., Stein, L., Ware, D., Wing, R., & Jackson, S. A. (2010). Dynamic Oryza Genomes: Repetitive DNA Sequences as Genome Modeling Agents. Rice, 3(4), 251–269. https://doi.org/10.1007/s12284-010-9054-7

Cranston, K. A., Hurwitz, B., Sanderson, M. J., Ware, D., Wing, R. A., & Stein, L. (2010). Phylogenomic Analysis of BAC-end Sequence Libraries in Oryza (Poaceae). Systematic Botany, 35(3), 512–523. https://doi.org/10.1600/036364410792495872

Hurwitz, B. L., Kudrna, D., Yu, Y., Sebastian, A., Zuccolo, A., Jackson, S. A., Ware, D., Wing, R. A., & Stein, L. (2010). Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza: Rice structural variation. The Plant Journal, 63(6), 990–1003. https://doi.org/10.1111/j.1365-313x.2010.04293.x