Publications

Bruggmann, R., Bharti, A. K., Gundlach, H., Lai, J., Young, S., Pontaroli, A. C., Wei, F., Haberer, G., Fuks, G., Du, C., Raymond, C., Estep, M. C., Liu, R., Bennetzen, J. L., Chan, A. P., Rabinowicz, P. D., Quackenbush, J., Barbazuk, W. B., Wing, R. A., … Messing, J. (2006). Uneven chromosome contraction and expansion in the maize genome. Genome Research, 16(10), 1241–1251. https://doi.org/10.1101/gr.5338906

Yan, H., Ito, H., Nobuta, K., Ouyang, S., Jin, W., Tian, S., Lu, C., Venu, R., Wang, G.-L., Green, P. J., Wing, R. A., Buell, C. R., Meyers, B. C., & Jiang, J. (2006). Genomic and Genetic Characterization of RiceCen3Reveals Extensive Transcription and Evolutionary Implications of a Complex Centromere. The Plant Cell, 18(9), 2123–2133. https://doi.org/10.1105/tpc.106.043794

Luo, M., Kim, H., Kudrna, D., Sisneros, N. B., Lee, S.-J., Mueller, C., Collura, K., Zuccolo, A., Buckingham, E. B., Grim, S. M., Yanagiya, K., Inoko, H., Shiina, T., Flajnik, M. F., Wing, R. A., & Ohta, Y. (2006). Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey. BMC Genomics, 7(1). https://doi.org/10.1186/1471-2164-7-106

Lin, Y.-R., Chow, T.-Y., Luo, M., Kudrna, D., Lin, C.-C., Wing, R. A., & Hsing, Y.- ie C. (2006). Two highly representative rice BAC libraries of japonica cv Tainung 67 suitable for rice structural and functional genomic research. Plant Science, 170(4), 889–896. https://doi.org/10.1016/j.plantsci.2005.12.016

Udall, J. A., Swanson, J. M., Haller, K., Rapp, R. A., Sparks, M. E., Hatfield, J., Yu, Y., Wu, Y., Dowd, C., Arpat, A. B., Sickler, B. A., Wilkins, T. A., Guo, J. Y., Chen, X. Y., Scheffler, J., Taliercio, E., Turley, R., McFadden, H., Payton, P., … Wendel, J. F. (2006). A global assembly of cotton ESTs. Genome Research, 16(3), 441–450. https://doi.org/10.1101/gr.4602906

Luo, M., Yu, Y., Kim, H., Kudrna, D., Itoh, Y., Agate, R. J., Melamed, E., Goicoechea, J. L., Talag, J., Mueller, C., Wang, W., Currie, J., Sisneros, N. B., Wing, R. A., & Arnold, A. P. (2006). Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region. Genomics, 87(1), 181–190. https://doi.org/10.1016/j.ygeno.2005.09.005

Haberer, G., Young, S., Bharti, A. K., Gundlach, H., Raymond, C., Fuks, G., Butler, E., Wing, R. A., Rounsley, S., Birren, B., Nusbaum, C., Mayer, K. F., & Messing, J. (2005). Structure and Architecture of the Maize Genome. Plant Physiology, 139(4), 1612–1624. https://doi.org/10.1104/pp.105.068718

Ammiraju, J. S., Luo, M., Goicoechea, J. L., Wang, W., Kudrna, D., Mueller, C., Talag, J., Kim, H., Sisneros, N. B., Blackmon, B., Fang, E., Tomkins, J. B., Brar, D., MacKill, D., McCouch, S., Kurata, N., Lambert, G., Galbraith, D. W., Arumuganathan, K., … Wing, R. A. (2005). The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Research, 16(1), 140–147. https://doi.org/10.1101/gr.3766306

Kumar, C. S., Wing, R. A., & Sundaresan, V. (2005). Efficient insertional mutagenesis in rice using the maize En/Spm elements. The Plant Journal, 44(5), 879–892. https://doi.org/10.1111/j.1365-313x.2005.02570.x

Ammiraju, J. S. S., Yu, Y., Luo, M., Kudrna, D., Kim, H., Goicoechea, J. L., Katayose, Y., Matsumoto, T., Wu, J., Sasaki, T., & Wing, R. A. (2005). Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome. Theoretical and Applied Genetics, 111(8), 1596–1607. https://doi.org/10.1007/s00122-005-0091-3

Bowers, J. E., Arias, M. A., Asher, R., Avise, J. A., Ball, R. T., Brewer, G. A., Buss, R. W., Chen, A. H., Edwards, T. M., Estill, J. C., Exum, H. E., Goff, V. H., Herrick, K. L., Steele, C. L. J., Karunakaran, S., Lafayette, G. K., Lemke, C., Marler, B. S., Masters, S. L., … Paterson, A. H. (2005). Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses. Proceedings of the National Academy of Sciences, 102(37), 13206–13211. https://doi.org/10.1073/pnas.0502365102

Pratt, L. H., Liang, C., Shah, M., Sun, F., Wang, H., Reid, S. P., Gingle, A. R., Paterson, A. H., Wing, R., Dean, R., Klein, R., Nguyen, H. T., Ma, H.- mei, Zhao, X., Morishige, D. T., Mullet, J. E., & Cordonnier-Pratt, M.-M. (2005). Sorghum Expressed Sequence Tags Identify Signature Genes for Drought, Pathogenesis, and Skotomorphogenesis from a Milestone Set of 16,801 Unique Transcripts. Plant Physiology, 139(2), 869–884. https://doi.org/10.1104/pp.105.066134

Wing, R. A., Ammiraju, J. S. S., Luo, M., Kim, H., Yu, Y., Kudrna, D., Goicoechea, J. L., Wang, W., Nelson, W., Rao, K., Brar, D., Mackill, D. J., Han, B., Soderlund, C., Stein, L., SanMiguel, P., & Jackson, S. (2005). The Oryza Map Alignment Project: The Golden Path to Unlocking the Genetic Potential of Wild Rice Species. Plant Molecular Biology, 59(1), 53–62. https://doi.org/10.1007/s11103-004-6237-x

The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. (2005). BMC Biology, 3(1). https://doi.org/10.1186/1741-7007-3-20

Nelson, W. M., Bharti, A. K., Butler, E., Wei, F., Fuks, G., Kim, H., Wing, R. A., Messing, J., & Soderlund, C. (2005). Whole-Genome Validation of High-Information-Content Fingerprinting. Plant Physiology, 139(1), 27–38. https://doi.org/10.1104/pp.105.061978

Sasaki, T. (2005). The map-based sequence of the rice genome. Nature, 436(7052), 793–800. https://doi.org/10.1038/nature03895

Wang, W., Tanurdzic, M., Luo, M., Sisneros, N., Kim, H. R., Weng, J.-K., Kudrna, D., Mueller, C., Arumuganathan, K., Carlson, J., Chapple, C., de Pamphilis, C., Mandoli, D., Tomkins, J., Wing, R. A., & Banks, J. A. (2005). Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics. BMC Plant Biology, 5(1). https://doi.org/10.1186/1471-2229-5-10

Yang, T.-J., Lee, S., Chang, S.-B., Yu, Y., de Jong, H., & Wing, R. A. (2005). In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons. Chromosoma, 114(2), 103–117. https://doi.org/10.1007/s00412-005-0342-8

Yang, T.-J., Yu, Y., Chang, S.-B., de Jong, H., Oh, C.-S., Ahn, S.-N., Fang, E., & Wing, R. A. (2005). Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions. Theoretical and Applied Genetics, 111(3), 467–478. https://doi.org/10.1007/s00122-005-2034-4

Jantasuriyarat, C., Gowda, M., Haller, K., Hatfield, J., Lu, G., Stahlberg, E., Zhou, B., Li, H., Kim, H., Yu, Y., Dean, R. A., Wing, R. A., Soderlund, C., & Wang, G.-L. (2005). Large-Scale Identification of Expressed Sequence Tags Involved in Rice and Rice Blast Fungus Interaction. Plant Physiology, 138(1), 105–115. https://doi.org/10.1104/pp.104.055624

Horn, R., Lecouls, A.-C., Callahan, A., Dandekar, A., Garay, L., McCord, P., Howad, W., Chan, H., Verde, I., Main, D., Jung, S., Georgi, L., Forrest, S., Mook, J., Zhebentyayeva, T., Yu, Y., Kim, H. R., Jesudurai, C., Sosinski, B., … Abbott, A. G. (2005). Candidate gene database and transcript map for peach, a model species for fruit trees. Theoretical and Applied Genetics, 110(8), 1419–1428. https://doi.org/10.1007/s00122-005-1968-x

Wei, F., Coe, E., Nelson, W., Bharti, A. K., Engler, F., Butler, E., Kim, H., Goicoechea, J. L., Chen, M., Lee, S., Fuks, G., Sanchez-Villeda, H., Schroeder, S., Fang, Z., McMullen, M., Davis, G., Bowers, J., Paterson, A. H., Schaeffer, M., … Wing, R. (2005). Physical and Genetic Structure of the Maize Genome Reflects its Complex Evolutionary History. PLoS Genetics, preprint(2007), e123. https://doi.org/10.1371/journal.pgen.0030123.eor

Tomkins, J., Fregene, M., Main, D., Kim, H., Wing, R., & Tohme, J. (2004). Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz). Plant Molecular Biology, 56(4), 555–561. https://doi.org/10.1007/s11103-004-5045-7

Messing, J., Bharti, A. K., Karlowski, W. M., Gundlach, H., Kim, H. R., Yu, Y., Wei, F., Fuks, G., Soderlund, C. A., Mayer, K. F. X., & Wing, R. A. (2004). Sequence composition and genome organization of maize. Proceedings of the National Academy of Sciences, 101(40), 14349–14354. https://doi.org/10.1073/pnas.0406163101

Thon, M. R., Martin, S. L., Goff, S., Wing, R. A., & Dean, R. A. (2004). BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea. Fungal Genetics and Biology, 41(7), 657–666. https://doi.org/10.1016/j.fgb.2004.02.003