Publications

Schlueter, J. A., Goicoechea, J. L., Collura, K., Gill, N., Lin, J.-Y., Yu, Y., Kudrna, D., Zuccolo, A., Vallejos, C. E., Muñoz-Torres, M., Blair, M. W., Tohme, J., Tomkins, J., McClean, P., Wing, R. A., & Jackson, S. A. (2008). BAC-end Sequence Analysis and a Draft Physical Map of the Common Bean (Phaseolus vulgaris L.) Genome. Tropical Plant Biology, 1(1), 40–48. https://doi.org/10.1007/s12042-007-9003-9

Kim, H., Hurwitz, B., Yu, Y., Collura, K., Gill, N., SanMiguel, P., Mullikin, J. C., Maher, C., Nelson, W., Wissotski, M., Braidotti, M., Kudrna, D., Goigochia, J. L., Stein, L., Ware, D., Jackson, S. A., Soderlund, C., & Wing, R. A. (2008). Construction, alignment and analysis of 12 framework physical maps that represent the 10 genome types of the genus Oryza. Genome Biology, 9(2), R45. https://doi.org/10.1186/gb-2008-9-2-r45

Soltis, D. E., Albert, V. A., Leebens-Mack, J., Palmer, J. D., Wing, R. A., dePamphilis, C. W., Ma, H., Carlson, J. E., Altman, N., Kim, S., Wall, P. K., Zuccolo, A., & Soltis, P. S. (2008). The Amborella genome: an evolutionary reference for plant biology. Genome Biology, 9(3), 402. https://doi.org/10.1186/gb-2008-9-3-402

Roulin, A., Piegu, B., Wing, R. A., & Panaud, O. (2007). Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza. The Plant Journal, 53(6), 950–959. https://doi.org/10.1111/j.1365-313x.2007.03388.x

Project, R. A. (2007). The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Research, 36(Database), D1028–D1033. https://doi.org/10.1093/nar/gkm978

Qu, S., Desai, A., Wing, R., & Sundaresan, V. (2007). A Versatile Transposon-Based Activation Tag Vector System for Functional Genomics in Cereals and Other Monocot Plants. Plant Physiology, 146(1), 189–199. https://doi.org/10.1104/pp.107.111427

Evolution of genes and genomes on the Drosophila phylogeny. (2007). Nature, 450(7167), 203–218. https://doi.org/10.1038/nature06341

Ma, J., Wing, R. A., Bennetzen, J. L., & Jackson, S. A. (2007). Evolutionary History and Positional Shift of a Rice Centromere. Genetics, 177(2), 1217–1220. https://doi.org/10.1534/genetics.107.078709

Presting, G. G., Budiman, M. A., Wood, T., Yu, Y., Kim, H., Goicoechea, J. L., Fang, E., Blackman, B., Jiang, J., Woo, S., Dean, R. A., Frisch, D., & Wing, R. A. (2007, September). A Framework for Sequencing the Rice Genome [Online post]. Novartis Foundation Symposium 236 ‐ Rice Biotechnology: Improving Yield, Stress Tolerance and Grain Quality; Wiley. https://doi.org/10.1002/9780470515778.ch3

Ammiraju, J. S. S., Zuccolo, A., Yu, Y., Song, X., Piegu, B., Chevalier, F., Walling, J. G., Ma, J., Talag, J., Brar, D. S., SanMiguel, P. J., Jiang, N., Jackson, S. A., Panaud, O., & Wing, R. A. (2007). Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genusOryza. The Plant Journal, 52(2), 342–351. https://doi.org/10.1111/j.1365-313x.2007.03242.x

Zuccolo, A., Sebastian, A., Talag, J., Yu, Y., Kim, H., Collura, K., Kudrna, D., & Wing, R. A. (2007). Transposable element distribution, abundance and role in genome size variation in the genus Oryza. BMC Evolutionary Biology, 7(1). https://doi.org/10.1186/1471-2148-7-152

Kim, H., Miguel, P. S., Nelson, W., Collura, K., Wissotski, M., Walling, J. G., Kim, J. P., Jackson, S. A., Soderlund, C., & Wing, R. A. (2007). Comparative Physical Mapping Between Oryza sativa (AA Genome Type) and O. punctata (BB Genome Type). Genetics, 176(1), 379–390. https://doi.org/10.1534/genetics.106.068783

Grover, C. E., Kim, H., Wing, R. A., Paterson, A. H., & Wendel, J. F. (2007). Microcolinearity and genome evolution in theAdhAregion of diploid and polyploid cotton (Gossypium). The Plant Journal, 50(6), 995–1006. https://doi.org/10.1111/j.1365-313x.2007.03102.x

Gowda, M., Venu, R.-C., Li, H., Jantasuriyarat, C., Chen, S., Bellizzi, M., Pampanwar, V., Kim, H., Dean, R. A., Stahlberg, E., Wing, R., Soderlund, C., & Wang, G.-L. (2007). Magnaporthe griseaInfection Triggers RNA Variation and Antisense Transcript Expression in Rice. Plant Physiology, 144(1), 524–533. https://doi.org/10.1104/pp.107.095653

Ma, J., Wing, R. A., Bennetzen, J. L., & Jackson, S. A. (2007). Plant centromere organization: a dynamic structure with conserved functions. Trends in Genetics, 23(3), 134–139. https://doi.org/10.1016/j.tig.2007.01.004

Itoh, T., Tanaka, T., Barrero, R. A., Yamasaki, C., Fujii, Y., Hilton, P. B., Antonio, B. A., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., Costa de Oliveira, A., Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, A. T., … Sasaki, T. (2007). Curated genome annotation ofOryza sativassp.japonicaand comparative genome analysis withArabidopsis thaliana. Genome Research, 17(2), 175–183. https://doi.org/10.1101/gr.5509507

Nelson, W. M., Dvorak, J., Luo, M.-C., Messing, J., Wing, R. A., & Soderlund, C. (2007). Efficacy of clone fingerprinting methodologies. Genomics, 89(1), 160–165. https://doi.org/10.1016/j.ygeno.2006.08.008

Gowda, M., Venu, R., Raghupathy, M. B., Nobuta, K., Li, H., Wing, R., Stahlberg, E., Couglan, S., Haudenschild, C. D., Dean, R., Nahm, B.-H., Meyers, B. C., & Wang, G.-L. (2006). Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. BMC Genomics, 7(1). https://doi.org/10.1186/1471-2164-7-310

Adema, C. M., Luo, M.-Z., Hanelt, B., Hertel, L. A., Marshall, J. J., Zhang, S.-M., DeJong, R. J., Kim, H.-R., Kudrna, D., Wing, R. A., Soderlund, C., Knight, M., Lewis, F. A., Caldeira, R. L., Jannotti-Passos, L. K., Carvalho, O. dos S., & Loker, E. S. (2006). A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni. Memórias Do Instituto Oswaldo Cruz, 101(suppl 1), 167–177. https://doi.org/10.1590/s0074-02762006000900027

Soderlund, C., Haller, K., Pampanwar, V., Ebbole, D., Farman, M., Orbach, M. J., Wang, G.-L., Wing, R., Xu, J.-R., Brown, D., Mitchell, T., & Dean, R. (2006). MGOS: A Resource for Studying Magnaporthe grisea and Oryza sativa Interactions. Molecular Plant-Microbe Interactions®, 19(10), 1055–1061. https://doi.org/10.1094/mpmi-19-1055

Hawkins, J. S., Kim, H., Nason, J. D., Wing, R. A., & Wendel, J. F. (2006). Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Research, 16(10), 1252–1261. https://doi.org/10.1101/gr.5282906

Piegu, B., Guyot, R., Picault, N., Roulin, A., Saniyal, A., Kim, H., Collura, K., Brar, D. S., Jackson, S., Wing, R. A., & Panaud, O. (2006). Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Research, 16(10), 1262–1269. https://doi.org/10.1101/gr.5290206

Hass-Jacobus, B. L., Futrell-Griggs, M., Abernathy, B., Westerman, R., Goicoechea, J.-L., Stein, J., Klein, P., Hurwitz, B., Zhou, B., Rakhshan, F., Sanyal, A., Gill, N., Lin, J.-Y., Walling, J. G., Luo, M. Z., Ammiraju, J. S. S., Kudrna, D., Kim, H. R., Ware, D., … Jackson, S. A. (2006). Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum. BMC Genomics, 7(1). https://doi.org/10.1186/1471-2164-7-199

Cunningham, C., Hikima, J.- ichi, Jenny, M. J., Chapman, R. W., Fang, G.-C., Saski, C., Lundqvist, M. L., Wing, R. A., Cupit, P. M., Gross, P. S., Warr, G. W., & Tomkins, J. P. (2006). New Resources for Marine Genomics: Bacterial Artificial Chromosome Libraries for the Eastern and Pacific Oysters (Crassostrea virginica and C. gigas). Marine Biotechnology, 8(5), 521–533. https://doi.org/10.1007/s10126-006-6013-9

Jung, J., Won, S. Y., Suh, S. C., Kim, H., Wing, R., Jeong, Y., Hwang, I., & Kim, M. (2006). The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis. Planta, 225(3), 575–588. https://doi.org/10.1007/s00425-006-0373-2